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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
22 85 May 8, 2020
9:44 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
10 43 Jun 3, 2020
2:31 PM
tRNAs
Questions about properly searching for and calling tRNAs.
13 55 May 22, 2020
11:43 AM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
110 341 Jun 3, 2020
3:07 PM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
16 65 Jun 26, 2020
2:47 PM
Request a new function on the SEA-PHAGES official list
46 131 May 20, 2020
8:45 PM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
16 57 May 1, 2020
4:16 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
sigma factors & transcription factors
1 3 May 30, 2020
11:50 AM
Function for Gene 1 of EK1 Phages
7 54 May 21, 2020
4:36 PM
Having trouble getting NCBI Blast data for a gene via …
3 11 May 10, 2020
3:38 PM
Tricky Start position decision: Need 2nd Opinion; Two overlapping Genes …
3 22 May 6, 2020
5:59 PM
General Question on RBS scores and start selection
4 20 May 4, 2020
7:17 AM
Gene or not a gene? MrMiyagi
3 21 May 3, 2020
11:07 PM
Tail Terminator in Cluster EE
3 13 May 1, 2020
4:52 PM
Tricky Start position decision
5 20 Apr 26, 2020
4:40 PM
Gene Numbering Questions and More: Phage SilentRX (UNK)
8 253 Apr 6, 2020
10:00 PM
GeneMark and G rubripertincta
4 245 Mar 21, 2020
4:11 PM
Assembly
1 15 Feb 26, 2020
12:58 PM
Addressing sequencing notes
2 217 Feb 5, 2020
2:15 PM
space for a promoter when changing direction?
2 227 Oct 15, 2019
11:42 AM
Mid-gene deletion causing frameshift and orphams
5 223 Jul 13, 2019
10:01 AM
BLAST score algorithm
1 11 Mar 21, 2019
11:25 AM
Annotations of Microbacterium foliorum
4 275 Mar 14, 2019
9:57 AM
Phage hits not showing in NCBI but 100% to Gordonia …
4 228 Feb 5, 2019
3:00 PM
Submission error
2 224 May 30, 2018
1:26 PM
Best Gordonia model for GeneMark
2 224 Feb 21, 2018
11:14 AM
New HHPred web site
9 293 Nov 6, 2017
11:54 PM

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