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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

SEA-PHAGES Publications

Below is a list of publications that are based on data generated by participants in the SEA-PHAGES program and are authored by SEA-PHAGES students or faculty.

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Gaballa JMGaballa JM, Dabrian K, Desai R, Ngo R, Park D, Sakaji E, Sun Y, Tan B, Brinck M, Brobst O, Fernando R, Kim H, McCarthy S, Murphy M, Sarkis A, Sevier P, Singh A, Wu D, Wu MY, Ennis HA, Luhar R, Miller JE, Orchanian SB, Salbato AN, Alam S, Brenner L, Kailani Z, Laskow J, Ma X, Miikeda A, Nol-Bernardino P, Sukhina A, Walas N, Wei W, Do NP, Fournier CT, Kim CJ, Mosier SF, Pierson C1 Romero IG, Sanchez M, Sawyerr O, Wang J, Watanabe R, Wu S, Chen A, Kazane K, Kettoola Y, Goodwin EC, Lund AJ, Villella W, Williams D, Freise A, Moberg Parker 2019 Microbiol Resour Announc. Genome Sequences of Cluster K Mycobacteriophages Deby, LaterM, LilPharaoh, Paola, SgtBeansprout, and Sulley. No
Salisbury A et alSalisbury A, Cassin E, Ayala-Pineda K, Barroga N, Cadiz V, Cisneros R, Fersini J, Jeanite T, Juste J, Ines J, Leyva G, Macalinao D, Muscelli S, Nhan S, Reyes GS, Rhoden H, Tan R, Torres E, Tran K, Uriarte-Valle G, Wallace C, Wong S, Regner K, Strong C, Tsourkas PK. 2019 Microbiol Resour Announc. Complete Genome Sequences of Mycobacterium smegmatis Phages Chewbacca, Reptar3000, and Riparian, Isolated in Las Vegas, Nevada. Yes
Apellido KA et alApellido KA, Balchander D, Erlich MC, Gocal JK, Gocal WA, Haile S, Kang AK, Koduri S, Natrajan M, Parikh AA, Tata RK, Walor TA, Wong BM, Nako S, Tran T, Islam E, Mammen MP; Drexel University SEA-PHAGES annotators 2016; Drexel University SEA-PHAGES annotators 2017; Drexel University SEA-PHAGES annotators 2018, Ball SL, Bollivar DW, Butela KA, Pope WH, McDonald MT, Tang CA, Dalia RR, Smith KPW, Little JL, Moyer AE, Gurney SMR. 2019 Microbiol Resour Announc. Complete Genome Sequences of 12 B1 Cluster Mycobacteriophages, Gareth, JangoPhett, Kailash, MichaelPhcott, PhenghisKhan, Phleuron, Phergie, PhrankReynolds, PhrodoBaggins, Phunky, Vaticameos, and Virapocalypse. Yes
Miller et al.Miller T, Bachhofer D, Cooper A, Doty J, Katuri J, Musgrave J, Palumbo A, Spann H, Stone A, Emmert K, Edwards J, Meik J, Pierce J, Edwards D. 2019 Microbiol Resour Announc. Complete Genome Sequence of Cluster O Mycobacterium smegmatis Bacteriophage Ryadel. No
Ponce Reyes S, Park PJ, Kaluka D, Washington JM.Ponce Reyes S, Park PJ, Kaluka D, Washington JM. 2019 Microbiol Resour Announc. Complete Genome Sequence of Rhodococcus erythropolis Phage Shuman No
Hughes LE et al.Hughes LE, Shaffer CD, Ware VC, Aguayo I, Aziz RM, Bhuiyan S, Bindert IS, Calovich-Benne CK, Chapman J, Donegan-Quick R, Farooq A, Garcia C, Graham LH, Green BY, Kenna MA, Kneeream ER, Laing CE, Mageeney CM, Meridew SN, Mikolon AR, Morgan RE, Nayek S, Olugbade ID, Pike KC, Schlegel LE, Shishido TC, Suresh T, Suri N, Weston Hafer K, Garlena RA, Russell DA, Cresawn SG, Pope WH, Jacobs-Sera D, Hatfull GF 2018 Genome Announcements Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species. No
Klyczek KK et al.Klyczek KK, Jacobs-Sera D, Adair TL, Adams SD, Ball SL, Benjamin RC, Bonilla JA, Breitenberger CA, Daniels CJ, Gaffney BL, Harrison M, Hughes LE, King RA, Krukonis GP, Lopez AJ, Monsen-Collar K, Pizzorno MC, Rinehart CA; SEA-PHAGES Program; PHIRE Program, Staples AK, Stowe EL, Garlena RA, Russell DA, Cresawn SG, Pope WH, Hatfull GF. 2018 Genome Announc. Complete Genome Sequences of 44 Arthrobacter Phages. Yes
Ali I, Jones AE, Mohamed A, Sivanathan V.Ali I, Jones AE, Mohamed A, Sivanathan V. 2018 Genome Announc. Genome Sequences of Ilzat and Eleri, Two Phages Isolated Using Microbacterium foliorum NRRL B-24224. No
Kent B et al.Kent B, Raymond T, Mosier PD, Johnson AA; the 2016–2017 VCU Phage Hunters. 2018 Genome Announc. Complete Genome Sequences of Bacillus Phages Janet and OTooleKemple52. Yes
Blocker D et alBlocker D, Koert M, Mattson C, Patel H, Patel P, Patel R, Paudel H; 2017 UMBC Phage Hunters, Erill I, Caruso SM. 2018 Genome Announc. Complete Genome Sequences of Six BI Cluster Streptomyces Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS. Yes
Stewart B et alStewart B, Adams M, Fuentes M, Hanson L, Sandoval E, Tovar M, Trautman C, Willis B, Emmert K, Edwards J, Meik J, Pierce J, Edwards D. 2018 Genome Announc. Complete Genome Sequence of Cluster A1 Mycobacterium smegmatis Bacteriophage Arlo. No
Fast KM et alFast KM, Keener TW, Castleberry S, Jones KD , Larrimore JD, Long CA, Newburn JT, Pritchett NC, Schellhammer PK, Sandel MW. 2018 Genome Announcements Complete Genome Sequences of Mycobacteriophages Kwksand96 and Cane17 Yes
Laungani R. et alLaungani R 1 , Tanner C 2 , Brooks TD 1 , Clement B 1 , Clouse M 1 , Doyle E 1 , Dworak S 3 , Elder B 1 , Marley K 1 , Schofield B 1 2018 Journal of Microbiology & Biology Education Finding Some Good in an Invasive Species: Introduction and Assessment of a Novel CURE to Improve Experimental Design in Undergraduate Biology Classrooms. No
Fast KM et alFast KM, Keener T, Ali R, Butcher BM, Millwood JD, Odom T, Schellhammer PK, Ufomadu E, Sandel MW 2018 Genome Announcements Genome Sequence of a Newly Isolated F2 Subcluster Mycobacteriophage from the Black Belt Geological Region of Western Alabama Yes
Lee, Puglisi, et alMartin Lee, Kayla M. Puglisi, UMBC STEM-BUILD Cohort 1, Ivan Erill, Steven M. Caruso 2018 Genome Announcements Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages Yes
Christopher James Pattona, Hari Kotturia Christopher James Pattona, Hari Kotturia 2018 Genome Announcements Genomic Sequence of Mycobacteriophage OKCentral2016 Yes
Doyle et al.Doyle EL, Fillman CL, Reyna NS, Tobiason DM, Westholm DE, Askins JL, Backus BP, Baker AC, Ballard HS, Bisesi PJ, Bond L, Byrnes D, Carlstedt H, Dodson KS, Fallert MJ, Foster KJ, Games DN, Grams TR, Guild NA, Hurd A, Iwata N, Kepler CR, Krenzke LR, Luekens K, Lewis J, McEntee C, McGee JC, Nalley N3, Plymale RC, Prochaska J, Rogers RG, Schipper JB, Snyder K, Uhrich K, Vermillion CD, Vickers SK, Wenta MD, Yates TZ, Young CF, Stoner TH, Pope WH, Jacobs-Sera D, Garlena RA, Russell DA, Cresawn SG, Hatfull GF. 2018 Genome Announcements Genome Sequences of Four Cluster P Mycobacteriophages 33
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2016 UMBC Phage Hunters 2018 Genome Announcements Complete Genome Sequence of Streptomyces Bacteriophage Abt2graduatex2 Yes
Pope WH et al.Pope WH, Montgomery MT, Bonilla JA, Dejong R, Garlena RA, Guerrero Bustamante C, Klyczek KK, Russell DA, Wertz JT, Jacobs-Sera D, Hatfull GF. 2017 Genome Announc. Complete Genome Sequences of 38 Gordonia sp. Bacteriophages. No
Fleischacker CL et alFleischacker CL, Segura-Totten M; SEA-PHAGES 2016 Bioinformatics Workshop, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF 2017 Genome Announc. Genome Sequence of Mycobacterium Phage CrystalP. No
Jacobs-Sera D et al.Jacobs-Sera D, Catinas O, Fernandez-Martinez M, Garcia A, Garlena RA, Guerrero Bustamante CA, Larsen MH, Medellin RH, Melendez-Ortiz MY, Melendez-Rivera CM, Mercado-Andino AK, Mercado-Delgado AJ, Ortiz-Ortiz CP, Quesada-Gordillo AM3 Ramos JM, Rubin MR, Russell DA, Sadana RA, Saha S, Vazquez E, Villarreal D, Hatfull GF. 2017 Genome Announc. Genome Sequences of Mycobacteriophages Kerberos, Pomar16, and StarStuff. No
Butela KA et al.Butela KA, Gurney SMR, Hendrickson HL, LeBlanc-Straceski JM, Zimmerman AM, Conant SB, Freed NE, Silander OK, Thomson JJ, Berkes CA, Bertolez C, Davies CG, Elinsky A, Hanlon AJ, Nersesyan J, Patel P, Sherwood J, Tieu Ngo T, Wisniewski KA, Yacoo K6 Arendse PM, Bowlen NW, Cunmulaj J, Downs JL, Ferrenberg CA, Gassman AE, Gilligan CER, Gorkiewicz E, Harness C, Huffman A, Jones C, Julien A, Kupic AE, Latu SF, Manning TJ, Maxwell D; Merrimack College SEA-PHAGES Annotators 2016, Meyer CE, Reardon M, Slaughter M, Swasey R, Tennent RI, Torres V, Waller T, Worcester RM, Yost BL, Cresawn SG, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA9 Hatfull GF, Kagey JD. 2017 Genome Announc. Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih. Yes
Adair TL et alAdair TL, Bonilla JA, Klyczek K2, Lee-Soety JY, Rosas-Acosta G, Harrison M; Baylor University SEA-PHAGES; University of Wisconsin–River Falls SEA-PHAGES; Saint Joseph’s University Phage Safari; University of Texas at El Paso SEA-PHAGES; Cabrini University SEA-PHAGES, Bowman CA, Cresawn SG, Garlena RA, Russell DA, Pope WH8 Jacobs-Sera D, Hatfull GF. 2017 Genome Announc. Complete Genome Sequences of Arthrobacter Phages Beans, Franzy, Jordan, Piccoletto, Shade, and Timinator. Yes
Edgington NP et al.Edgington NP, Voshell SM, Ware VC, Akoto FF, Alhout AA, Atwal GJ, Balyozian JB, Cadieux ZA, Chop BM, Cresawn SG, Cudkevich N, Faltine-Gonzalez DZ, Garlena RA, Gilmer BJ, Graham LH, Grapel MS, Haleem MM, Jacobs-Sera D, Kenna MA, Khan MA, Klein TN, Korenberg JB, Lichak BP, Mageeney CM, McKinley LN, Mendello KR, Myers CM, Nguyen AT, Pasqualucci BA, Pope WH, Pyfer LM, Ramirez WA, Reisner JR, Russell DA, Sapao PA, Saux VC, Singh I, Stoner TH, Swope RH, Thoonkuzhy MJ, Walters ML, Vargas LA, Veliz CA, Zhang KD, Zuilkoski CM, Hatfull GF. 2017 Genome Announc. Genome Sequences of Chancellor, Mitti, and Wintermute, Three Subcluster K4 Phages Isolated Using Mycobacterium smegmatis mc2155. 1
Lee-Soety JY et al.Lee-Soety JY, Bhatt S, Adair TL, Bonilla JA, Klyczek KK, Harrison M; Saint Joseph’s University SEA-PHAGES; Baylor University SEA-PHAGES; University of Wisconsin-River Falls SEA-PHAGES; Cabrini University SEA-PHAGES, Garlena RA, Bowman CA, Russell DA, Pope WH, Jacobs-Sera D, Cresawn SG, Hatfull GF. 2017 Genome Announc. Genome Sequences of 12 Cluster AN Arthrobacter Phages. Yes
King RA et alKing RA, Slowan-Pomeroy TM, Thomas JE, Ahmed T, Alexander KL, Biddle JM, Daniels MK1, Rowlett JR, Senay TE, Rinehart CA, Staples AK, Rowland NS, Gaffney BL, Emmons CB, Hauk MD, Nguyen RL, Naegele L, Strickland SS, Briggs LA, Rush AN, Saha S, Sadana R, Cresawn SG, Russell DA, Garlena RA, Pope WH, Jacobs-Sera D, Hatfull GF. 2017 Genome Announc. Genome Sequences of Subcluster K5 Mycobacteriophages AlleyCat, Edugator, and Guillsminger. No
Saha S et alSaha S, Yan W, Washington JM, Davis WB, Barbazuk WB, Medellin R, Mendez A, Ramos JR, Sadana R, Edmonds M, Feng G, Ilyas M, Kaiser J, Monroe SJ, Pham TV, Cresawn SG, Garlena RA, Stoner TH, Russell DA, Pope WH, Jacobs-Sera D, Hatfull GF. 2017 Genome Announc. Genome Sequences of Mycobacteriophages Findley, Hurricane, and TBond007 1
Daniel A Russell Graham F HatfullDaniel A Russell Graham F Hatfull 2017 Bioinformatics PhagesDB: the actinobacteriophage database No
Mavrich TN, Hatfull GFMavrich TN, Hatfull GF 2017 Nat Microbiol. Bacteriophage evolution differs by host, lifestyle and genome No
Klyczek KK et al.Klyczek KK, Bonilla JA, Jacobs-Sera D, Adair TL, Afram P, Allen KG, Archambault ML, Aziz RM, Bagnasco FG, Ball SL, Barrett NA, Benjamin RC, Blasi CJ, Borst K, Braun MA, Broomell H, Brown CB, Brynell ZS, Bue AB, Burke SO, Casazza W, Cautela JA, Chen K, Chimalakonda NS, Chudoff D, Connor JA, Cross TS, Curtis KN, Dahlke JA, Deaton BM, Degroote SJ, DeNigris DM, DeRuff KC, Dolan M, Dunbar D, Egan MS, Evans DR, Fahnestock AK, Farooq A, Finn G, Fratus CR, Gaffney BL, Garlena RA, Garrigan KE, Gibbon BC, Goedde MA, Guerrero Bustamante CA, Harrison M, Hartwell MC, Heckman EL, Huang J, Hughes LE, Hyduchak KM, Jacob AE, Kaku M, Karstens AW, Kenna MA, Khetarpal S, King RA, Kobokovich AL, Kolev H, Konde SA, Kriese E, Lamey ME, Lantz CN, Lapin JS, Lawson TO, Lee IY, Lee SM, Lee-Soety JY, Lehmann EM, London SC, Lopez AJ, Lynch KC, Mageeney CM, Martynyuk T, Mathew KJ, Mavrich TN, McDaniel CM, McDonald H, McManus CJ, Medrano J, Mele FE, Menninger JE, Miller SN, Minick JE, Nabua CT, Napoli CK, Nkangabwa M, Oates EA, Ott CT, Pellerino SK, Pinamont WJ, Pirnie RT, Pizzorno MC, Plautz EJ, Pope WH, Pruett KM, Rickstrew G, Rimple PA, Rinehart CA, Robinson KM, Rose VA, Russell DA, Schick AM, Schlossman J, Schneider VM, Sells CA, Sieker JW, Silva MP, Silvi MM, Simon SE, Staples AK, Steed IL, Stowe EL, Stueven NA, Swartz PT, Sweet EA, Sweetman AT, Tender C, Terry K, Thomas C, Thomas DS, Thompson AR, Vanderveen L, Varma R, Vaught HL, Vo QD, Vonberg ZT, Ware VC, Warrad YM, Wathen KE, Weinstein JL, Wyper JF3, Yankauskas JR, Zhang C, Hatfull GF 2017 PLoS One. Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages. 4
Pope et al.Pope WH, Mavrich TN, Garlena RA, Guerrero-Bustamante CA, Jacobs-Sera D, Montgomery MT, Russell DA, Warner MH; Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES), Hatfull GF 2017 MBio. Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships No
Hanauer et al.Hanauer DI, Graham MJ; SEA-PHAGES, Betancur L, Bobrownicki A, Cresawn SG, Garlena RA, Jacobs-Sera D, Kaufmann N, Pope WH, Russell DA, Jacobs WR Jr, Sivanathan V, Asai DJ, Hatfull GF. 2017 Proc Natl Acad Sci U S A. An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. No
Chung HM et alChung HM, D'Elia T, Ross JF, Alvarado SM, Brantley MC, Bricker LP, Butler CR, Crist C, Dane JM, Farran BW, Hobbs S, Lapak M, Lovell C, Ludergnani N, McMullen A, Mirza SA, Thrift N, Vaughan DP, Worley G, Ejikemeuwa A, Zaw M, Albritton CF, Bertrand SC, Chaudhry SS, Cheema VA, Do C, Do ML, Duong HM, El-Desoky DH, Green KM, Lee RN, Thornton LA, Vu JM, Zahra MN, Cresawn SG, Stoner TH, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF 2017 Genome Announcements Complete Genome Sequences of Mycobacteriophages Clautastrophe, Kingsolomon, Krypton555, and Nicholas 1
Adair et al.Adair TL, Stowe E, Pizzorno MC, Krukonis G, Harrison M; Baylor University SEA-PHAGES; Bucknell University SEA-PHAGES; Cabrini University SEA-PHAGES, Cresawn SG, Garlena RA, Russell DA, Pope WH, Jacobs-Sera D, Hatfull GF. 2017 Genome Announcements Genome Sequences of Three Cluster AU Arthrobacter Phages, Caterpillar, Nightmare, and Teacup Yes
Herren et al.Herren CD, Peister A, Breton TS, Hill MS, Anderson MS, Chang AW, Klein SB, Thornton MM, Vars SJ, Wagner KE, Wiebe PL, Williams TG, Yanez CP, Ackles JM, Artis D, Brazier RJ, Bryant RJ, Callwood KO, Carter IH, DeBose CL, Edwards CD, Ezemba IC, Joaquin RR, Meghoo-Peddie ZM, Meghoo-Peddie ZG, Moore RW, Smith CE, Turner AJ, Vorters RL, Wider JJ, Krout LL, Comis MS, Davick MJ, Michaud EE, Shevenell BE, Stanley SE, Frank CI, Montgomery JR, Blumer LS, Doty JA, Smith-Caldas M, Pope WH, Cresawn SG, Russell DA, Garlena RA, Jacobs-Sera D, Hatfull GF. 2017 Genome Announcements Genome Sequences of Four Subcluster L2 Mycobacterium Phages, Finemlucis, Miley16, Wilder, and Zakai No
Bonilla et al.Bonilla, J. A., Isern, S., Findley, A. M., Klyczek, K. K., Michael, S. F., Saha, M. S., Buchser, W.J., Forsyth, M. H., Paudel, S., Gissendanner, C. R., Wiedemeier, A. M. D., Alonzo, F. L., University of Wisconsin-River Falls, SEA-PHAGES, Florida Gulf Coast University, SEA-PHAGES, University of Louisiana-Monroe, SEA-PHAGES, College of William and Mary SEA-PHAGES, Garlena, R. A., Russell, D. A., Pope, W. H., Cresawn, S. G., Jacobs-Sera, D., Hatfull, G. F. 2017 Genome Announcements Genome Sequences of 19 Rhodococcus erythropolis Cluster CA Phages Yes
Anders et al.Anders KR, Barekzi N, Best AA, Frederick GD, Mavrodi DV, Vazquez E; SEA-PHAGES, Amoh NYA, Baliraine FN, Buchser WJ, Cast TP, Chamberlain CE, Chung HM, D'Angelo WA, Farris CT, Fernandez-Martinez M, Fischman HD, Forsyth MH, Fortier AG, Gallo KF, Held GJ, Lomas MA, Maldonado-Vazquez NY, Moonsammy CH, Namboote P, Paudel S, Polley SM, Reyes GM, Rubin MR, Saha MS, Stukey J, Tobias TD, Garlena RA, Stoner TH, Cresawn SG, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF. 2017 Genome Announcements Genome Sequences of Mycobacteriophages Amgine, Amohnition, Bella96, Cain, DarthP, Hammy, Krueger, LastHope, Peanam, PhelpsODU, Phrank, SirPhilip, Slimphazie, and Unicorn Yes
Dedrick et al.Dedrick, R. M., Jacobs-Sera, D., Guerrero Bustamante, C. A., Garlena, R. A., Mavrich, T. N., Pope, W. H. , Reyes, J. C., Russell, D. A., Adair, T., Alvey, R., Bonilla, J. A., Bricker, J. S., Brown, B. R., Byrnes, D., Cresawn, S. G., Davis, W. B., Dickson, L. A., Edgington, N. P., Findley, A. M., Golebiewska, U., Grose, J. H., Hayes, C. F., Hughes, L. E., Hutchison, K. W., Isern, S., Johnson, A. A., Kenna, M. A., Klyczek, K. K, Mageeney, C. M., Michael, S. F., Molloy, S. D., Montgomery, M. T., Neitzel, J., Page, S. T., Pizzorno, M. C., Poxleitner, M. K., Rinehart, C. A., Robinson, C. J., Rubin, M. R., Teyim, J. N., Vazquez, E., Ware, V. C., Washington, J., and Hatfull, G. F. 2017 Nature Microbiology Prophage-mediated defence against viral attack and viral counter-defence. No
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2016 UMBC Phage Hunters 2017 Genome Announcements Complete Genome Sequences of Three phi29-Like Bacillus cereus Group Podoviridae Yes
Donegan-Quick et alRichard Donegan-Quick, Zane A. Gibbs, Patricia O. Amaku, Joshua T. Bernal, Dana A. M. Boyd, Angela R. Burr, Rainna E. Coelho, Akpedje S. Dossou, Ryan M. Henry, Mai Huynh, Thalia A. Kanani-Hendijani, Guillermina Martinez, Tianeaka O. McClendon-Moss, Sergio Orozco, Johnny M. San Martin, Kaitlyn E. Stoddart, Madison M. Stringer, Rachel L. Villegas, Subhayu Nayek, Nikita Suri, Rebecca A. Garlena, Daniel A. Russell, Lee E. Hughes 2017 Genome Announcements Genome Sequences of Five Streptomyces Bacteriophages Forming Cluster BG Yes
Kirk Anders, Marianne K. PoxlietnerKirk R. Anders, Alex M. Murphy*, William F. Ettinger, Douglas Kempthorne, Charles Kittridge, Alex Kures, Sarah Lundgren, Jacob Masters, Rachel Noyes, Christina Winters, Perry Yazzolino, Kasandra Ziebert, Joseph Haydock, Stephen Hayes, Rebecca A. Garlena, Daniel A. Russell, Marianne K. Poxleitner, Ann-Scott H. Ettinger 2017 Genome Announcements Genome Sequences of Cluster K Mycobacteriophages DrHayes, Urkel, and SamuelLPlaqson Yes
Hatfull GF et al.Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) Program; KwaZulu-Natal Research Institute for Tuberculosis and HIV (K-RITH) Mycobacterial Genetics Course; University of California–Los Angeles Research Immersion Laboratory in Virology; Phage Hunters Integrating Research and Education (PHIRE) Program. 2016 Genome Announc. Complete Genome Sequences of 61 Mycobacteriophages. Yes
Pope WH et al.Pope WH, Biery DN, Huff ZT, Huynh AB, McFadden WM, Mouat JS, Schneiderman S, Song H, Szpak LE, Umbaugh MS, German BA, McDonnell JE, Mezghani N, Schafer CE, Thompson PK, Ulbrich MC, Yu VJ, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequences of Gordonia terrae Phages Attis and SoilAssassin. 16
Pope WH et al.Pope WH, Brown AK, Fisher DJ, Okwiya NH, Savage KA, German BA, McDonnell JE, Schafer CE, Yu VJ, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequence of Gordonia Bacteriophage Lucky10. 10
Pope WH et al.Pope WH, Davis JP, O'Shea S, Pfeiffer AC, Rich AN, Xue JC, Shedlock KA, Stanton AC, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequences of Gordonia Phages Hotorobo, Woes, and Monty. 8
Pope WH et al.Pope WH, Benczkowski MS, Green DE, Hwang M, Kennedy B, Kocak B, Kruczek E, Lin L, Moretti ML, Onelangsy FL, Mezghani N, Milliken KA, Toner CL, Thompson PK, Ulbrich MC, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequences of Gordonia terrae Phages Benczkowski14 and Katyusha. 15
Pope WH et al.Pope WH, Bandyopadhyay A, Carlton ML, Kane MT, Panchal NJ, Pham YC, Reynolds ZJ, Sapienza MS, German BA, McDonnell JE, Schafer CE, Yu VJ, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequence of Gordonia Phage Yvonnetastic. 12
Pope WH et al.Pope WH, Bandla S, Colbert AK, Eichinger FG, Gamburg MB, Horiates SG, Jamison JM, Julian DR, Moore WA, Murthy P, Powell MC, Smith SV, Mezghani N, Milliken KA, Thompson PK, Toner CL, Ulbrich MC, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequences of Gordonia Phages BaxterFox, Kita, Nymphadora, and Yeezy. 17
Pope WH et al.Pope WH, Akbar AF, Ayers TN, Belohoubek SG, Chung CF, Hartman AC, Kayiti T, Kessler CM2 Koman PI, Kotovskiy GA, Morgan TM, Rohac RM, Silva GM, Willis CE 3rd, Milliken KA, Shedlock KA, Stanton AC, Toner CL, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequences of Gordonia Bacteriophages Obliviate, UmaThurman, and Guacamole. 18
Pope WH et al.Pope WH, Berryman EN, Forrest KM, McHale L, Wertz AT, Zhuang Z, Kasturiarachi NS, Pressimone CA, Schiebel JG, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequence of Gordonia Phage BetterKatz. 9
Pope WH et al.Pope WH, Guido MJ, Iyengar P, Nigra JT, Serbin MB, Kasturiarachi NS, Pressimone CA, Schiebel JG, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequence of Gordonia Phage Emalyn. 8
Montgomery MT et alMontgomery MT, Pope WH, Arnold ZM, Basina A, Iyer AM, Stoner TH, Kasturiarachi NS, Pressimone CA, Schiebel JG, Furbee EC, Grubb SR, Warner MH, Garlena RA, Russell DA, Jacobs-Sera D1, Hatfull GF. 2016 Genome Announc. Genome Sequences of Gordonia Phages Bowser and Schwabeltier. 8
Pope WH et al.Pope W, Anderson KC, Arora C, Bortz ME, Burnet G, Conover DH, D'Incau GM, Ghobrial JA, Jonas AL, Migdal EJ, Rote NL, German BA, McDonnell JE, Mezghani N, Schafer CE, Thompson PK, Ulbrich MC, Yu VJ, Furbee EC, Grubb SR, Warner MH, Montgomery MT, Garlena RA, Russell DA, Jacobs-Sera D, Hatfull GF. 2016 Genome Announc. Genome Sequences of Gordonia terrae Bacteriophages Phinally and Vivi2. 18
Bollivar DW et al.Bollivar DW, Bernardoni B, Bockman MR, Miller B2, Russell DA, Delesalle VA, Krukonis GP, Hatfull GF, Cross MR, Szewczyk MM, Eppurath A. 2016 Genome Announc. Complete Genome Sequences of Five Bacteriophages That Infect Rhodobacter capsulatus. No
Russell DA, Hatfull GF.Russell DA, Hatfull GF. 2016 Genome Announc. Complete Genome Sequence of Arthrobacter sp. ATCC 21022, a Host for Bacteriophage Discovery. No
Mills ML et alMills ML, Bragg J, Bruce A, Dehn A, Drouin J, Hefner M, Katon D, McHugh D, Zeba F, Bowman CA, Cresawn SG, Jacobs-Sera D, Russell DA, Pope WH, Hatfull GF, Dunbar DA, Zegers GP, Page ST. 2016 Genome Announc. Genome Sequences of Newly Isolated Mycobacteriophages Forming Cluster S. 9
Russell DA et alRussell DA, Guerrero Bustamante CA, Garlena RA, Hatfull GF. 2016 Genome Announc. Complete Genome Sequence of Gordonia terrae 3612 No
Chudoff D et alChudoff D, Conboy A, Conboy D, Atoulelou M, Hasan S, Martinez A, Mastrando J, Roy R, Schmidt R, Sheed K, Smith J, Sperratore M, Struga R, Starr K, Suppi R, Uguru U, Terry K, Villafuerte R, Yuan V, Dunbar D. 2016 Genome Announc. Genome Sequence of Mycobacteriophage Cabrinians. 19
Robinson CJ et alRobinson CJ, London-Thomas LY, Dickson LA, Clinton TA, Baig H, Bute M, Fahad M, Farrakhan K, Grady N, Guthrie NE, Hafid R, Harvey J, Hunnicutt K, Larsen VL, McDuffie T, McGee EN, Pailin JY, Peacock B, Thomas A, Anderson WA. 2016 Genome Announc. Genome Sequence of Mycobacteriophage ErnieJ. 18
Jackson PN et al.Jackson PN, Embry EK, Johnson CO, Watson TL, Weast SK, DeGraw CJ, Douglas JR, Sellers JM, D'Angelo WA, Mavrodi DV. 2016 Genome Announc. Genome Sequence of Mycobacterium Phage Waterfoul. 7
Berg JA et al.Berg JA, Merrill BD, Crockett JT, Esplin KP, Evans MR, Heaton KE, Hilton JA, Hyde JR, McBride MS, Schouten JT, Simister AR, Thurgood TL, Ward AT, Breakwell DP, Hope S, Grose JH. 2016 PLoS One. Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages. No
Dedrick et al.Dedrick RM, Mavrich TN, Ng WL, Cervantes Reyes JC, Olm MR, Rush RE, Jacobs-Sera D, Russell DA, Hatfull GF. 2016 Mol Microbiol. Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems. 3
Bradshaw JC, Gongola AB, Reyna NS.Bradshaw JC, Gongola AB, Reyna NS. 2016 J Vis Exp. Rapid Verification of Terminators Using the pGR-Blue Plasmid and Golden Gate Assembly. No
Staub NL et alStaub NL, Poxleitner M, Braley A, Smith-Flores H, Pribbenow CM, Jaworski L, Lopatto D, Anders KR. 2016 CBE Life Sci Educ. Scaling Up: Adapting a Phage-Hunting Course to Increase Participation of First-Year Students in Research. No
Delesalle VA, Tanke NT, Vill AC, Krukonis GP.Delesalle VA, Tanke NT, Vill AC, Krukonis GP. 2016 Bacteriophage. Testing hypotheses for the presence of tRNA genes in mycobacteriophage genomes. No
Kelley DS, Lennon CW; SEA-PHAGES, Belfort M, Novikova O.Kelley DS, Lennon CW; SEA-PHAGES, Belfort M, Novikova O. 2016 MBio. Mycobacteriophages as Incubators for Intein Dissemination and Evolution. No
Hanauer DI, Graham MJ, Hatfull GF.Hanauer DI, Graham MJ, Hatfull GF. 2016 CBE Life Sci Educ. A Measure of College Student Persistence in the Sciences (PITS). No
Merrill BD, Ward AT1, Grose JH, Hope S.Merrill BD, Ward AT1, Grose JH, Hope S. 2016 BMC Genomics. Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies No
Layton et alLayton SR, Hemenway RM, Munyoki CM, Barnes EB, Barnett SE, Bond AM, Narvaez JM, Sirisakd CD, Smith BR, Swain J, Syed O, Bowman CA, Russell DA, Bhuiyan S, Donegan-Quick R, Benjamin RC, Hughes LE. 2016 Genome Announcements Genome Sequences of Streptomyces Phages Amela and Verse Yes
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2015 UMBC Phage Hunters 2016 Genome Announcements Genome Sequence of Bacillus cereus Group Phage SalinJah Yes
Sauder et alSauder A.B., Quinn M.R., Brouillette A., Caruso S., Cresawn S., Erill I., Lewis L., Loesser-Casey K., Pate M., Scott C., Stockwell S., Temple L. 2016 Virology Genomic characterization and comparison of seven Myoviridae bacteriophage infecting Bacillus thuringiensis Yes
Abraham, Bousquet, Bruff, et alJ. Abraham, A.-C. Bousquet, E. Bruff, N. Carson, A. Clark, A. Connell, Z. Davis, J. Dums, C. Everington, A. Groth, N. Hawes, N. McArthur, C. McKenney, A. Oufkir, B. Pearce, S. Rampal, H. Rozier, J. Schaff, T. Slehria, S. Carson, E. S. Miller 2016 Genome Announcements Paenibacillus larvae Phage Tripp Genome Has 378-Base-Pair Terminal Repeats Yes
Merrill BD et alMerrill BD, Berg JA, Graves KA, Ward AT, Hilton JA, Wake BN, Grose JH, Breakwell DP1 Burnett SH. 2015 Genome Announc. Genome Sequences of Five Additional Brevibacillus laterosporus Bacteriophages. 4
Hanauer DI, Hatfull G.Hanauer DI, Hatfull G. 2015 CBE Life Sci Educ. Measuring Networking as an Outcome Variable in Undergraduate Research Experiences. No
Siranosian B. et al.Siranosian B, Perera S, Williams E, Ye C, de Graffenried C, Shank P. 2015 F1000Res. Tetranucleotide usage highlights genomic heterogeneity among mycobacteriophages. No
Cross T et al.Cross T, Schoff C, Chudoff D, Graves L, Broomell H, Terry K, Farina J, Correa A, Shade D, Dunbar D. 2015 J Vis Exp. An optimized enrichment technique for the isolation of Arthrobacter bacteriophage species from soil sample isolates. No
Halleran et al.Halleran A, Clamons S, Saha M 2015 PLos One Transcriptomic Characterization of an Infection of Mycobacterium smegmatis by the Cluster A4 Mycobacteriophage Kampy. No
Carson et alCarson S, Bruff E, DeFoor W, Dums J, Groth A, Hatfield T, Iyer A, Joshi K, McAdams S, Miles D, Miller D, Oufkir A, Raynor B, Riley S, Roland S, Rozier H, Talley S, Miller ES. 2015 Genome Announcements Genome Sequences of Six Paenibacillus larvae Siphoviridae Phages 16
Pope WH et alPope WH, Carbonara ME, Cioffi HM, Cruz T, Dang BQ, Doyle AN, Fan OH, Gallagher M, Gentile GM, German BA, Farrell ME, Gerwig M, Hunter KL, Lefever VE, Marfisi NA, McDonnell JE, Monga JK, Quiroz KG, Pong AC, Rimple PA, Situ M, Sohnen PC, Stockinger AN, Thompson PK, Torchio NM, Toner CL, Ulbrich MC, Vohra NI, Zakir A, Adkins NL, Brown BR, Churilla BM, Kramer ZJ, Lapin JS, Montgomery MT, Prout AK, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome Sequences of Mycobacteriophages AlanGrant, Baee, Corofin, OrangeOswald, and Vincenzo, New Members of Cluster B. 35
Pope WH et alPope WH, Augustine DA, Carroll DC, Duncan JC, Harwi KM, Howry R, Jagessar B, Lum BA, Meinert JW, Migliozzi JS, Milliken KA, Mitchell CJ, Nalatwad AS, Orlandini KC, Rhein MJ, Saravanan V, Seese BA, Schiebel JG, Thomas KB, Adkins NL, Cohen KL, Iyengar VB, Kim H, Kramer ZJ, Montgomery MT, Schafer CE, Wilkes KE, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF 2015 Genome Announcements Genome Sequences of Cluster G Mycobacteriophages Cambiare, FlagStaff, and MOOREtheMARYer. 26
Pope WH et alPope WH, Bernstein NI, Fasolas CS, Mezghani N, Pressimone CA, Selvakumar P, Stanton AC, Lapin JS, Prout AK, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of Mycobacteriophage Mindy 8
Pope WH et alPope WH, Carter JT, Dasher KL, Haynberg MC, Reddi A, Shedlock KA, Lapin JS, Prout AK, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of a newly isolated mycobacteriophage, ShedlockHolmes 7
Pope WH et alPope WH, Jacobetz E, Johnson CA, Kihle BL, Sobeski MA, Werner MB, Adkins NL, Kramer ZJ, Montgomery MT, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of Mycobacteriophage Phayonce 8
Pope WH et alPope WH, Ahmed T, Drobitch MK, Early DR, Eljamri S, Kasturiarachi NS, Klonicki EF, Manjooran DT, Ní Chochlain AN, Puglionesi AO, Rajakumar V, Shindle KA, Tran MT, Brown BR, Churilla BM, Cohen KL, Wilkes KE, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF 2015 Genome Announcements Genome sequences of Mycobacteriophages Luchador and Nerujay 16
Pope WH et alPope WH, Bina EA, Brahme IS, Hill AB, Himmelstein PH, Hunsicker SM, Ish AR, Le TS, Martin MM, Moscinski CN, Shetty SA, Swierzewski T, Iyengar VB, Kim H, Schafer CE, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of Mycobacteriophage Momo 14
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2013 UMBC Phage Hunters 2015 Genome Announcements Genome Sequences of Two Bacillus cereus Group Bacteriophages, Eyuki and AvesoBmore No
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2014 UMBC Phage Hunters 2015 Genome Announcements Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba No
Pope, Bowman, Russell, et alPope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course 2015 eLIFE Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity Yes
Cresawn SG, Pope WH, Jacobs-Sera D, Bowman CA, et alCresawn SG, Pope WH, Jacobs-Sera D, Bowman CA, Russell DA, Dedrick RM, Adair T, Anders KR, Ball S, Bollivar D, Breitenberger C, Burnett SH, Butela K, Byrnes D, Carzo S, Cornely KA, Cross T, Daniels RL, Dunbar D, Findley AM, Gissendanner CR, Golebiewska UP, Hartzog GA, Hatherill JR, Hughes LE, Jalloh CS, De Los Santos C, Ekanem K, Khambule SL, King RA, King-Smith C, Klyczek K, Krukonis GP, Laing C, Lapin JS, Lopez AJ, Mkhwanazi SM, Molloy SD, Moran D, Munsamy V, Pacey E, Plymale R, Poxleitner M, Reyna N, Schildbach JF, Stukey J, Taylor SE, Ware VC, Wellmann AL, Westholm D, Wodarski D, Zajko M, Zikalala TS, Hendrix RW, Hatfull GF 2015 PLoS One Comparative genomics of Cluster O mycobacteriophages Yes
Grose JH et al.Grose JH, Jensen JD, Merrill BD, Fisher JN, Burnett SH, Breakwell DP. 2014 Genome Announc. Genome Sequences of Three Novel Bacillus cereus Bacteriophages. 4
Grose JH, et alGrose JH, Jensen GL, Burnett SH, Breakwell DP 2014 BMC Genomics Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity No
Grose JH, et alGrose JH, Belnap DM, Jensen JD, Mathis AD, Prince JT, Merrill BD, Burnett SH, Breakwell DP 2014 Journal of Virology The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors No
Gissendanner CR et alGissendanner CR, Wiedemeier AM, Wiedemeier PD, Minton RL, Bhuiyan S, Harmson JS, Findley AM 2014 Journal of Basic Microbiology A web-based restriction endonuclease tool for mycobacteriophage cluster prediction No
Jordan TC et alJordan TC, Burnett SH, Carson S, Caruso SM, Clase K, DeJong RJ, Dennehy JJ, Denver DR, Dunbar D, Elgin SC, Findley AM, Gissendanner CR, Golebiewska UP, Guild N, Hartzog GA, Grillo WH, Hollowell GP, Hughes LE, Johnson A, King RA, Lewis LO, Li W, Rosenzweig F, Rubin MR, Saha MS, Sandoz J, Shaffer CD, Taylor B, Temple L, Vazquez E, Ware VC, Barker LP, Bradley KW, Jacobs-Sera D, Pope WH, Russell DA, Cresawn SG, Lopatto D, Bailey CP, Hatfull GF. 2014 mBio A broadly implementable research course in phage discovery and genomics for first-year undergraduate students No
Pope WH et alPope WH, Anders KR, Baird M, Bowman CA, Boyle MM, Broussard GW, Chow T, Clase KL, Cooper S, Cornely KA, DeJong RJ, Delesalle VA, Deng L, Dunbar D, Edgington NP, Ferreira CM, Weston Hafer K, Hartzog GA, Hatherill JR, Hughes LE, Ipapo K, Krukonis GP, Meier CG, Monti DL, Olm MR, Page ST, Peebles CL, Rinehart CA, Rubin MR, Russell DA, Sanders ER, Schoer M, Shaffer CD, Wherley J, Vazquez E, Yuan H, Zhang D, Cresawn SG, Jacobs-Sera D, Hendrix RW, Hatfull GF. 2014 Journal of Virology Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repetoires of tRNA isotypes Yes
Hatfull GF et al.Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) Program; KwaZulu-Natal Research Institute for Tuberculosis and HIV (K-RITH) Mycobacterial Genetics Course; University of California—Los Angeles Research Immersion Laboratory in Virology; Phage Hunters Integrating Research and Education (PHIRE) Program. 2013 Genome Announc. Complete genome sequences of 63 mycobacteriophages. No
Breakwell DP et alBreakwell DP, Barrus EZ, Benedict AB, Brighton AK, Fisher JN, Gardner AV, Kartchner BJ, Ladle KC, Lunt BL, Merrill BD, Morrell JD, Burnett SH, Grose JH. 2013 Genome Announc. Genome sequences of five b1 subcluster mycobacteriophages. 10
Breakwell, Barrus, Benedict, et alBreakwell DP1, Barrus EZ, Benedict AB, Brighton AK, Fisher JN, Gardner AV, Kartchner BJ, Ladle KC, Lunt BL, Merrill BD, Morrell JD, Burnett SH, Grose JH. 2013 Genome Announcements Genome sequences of five b1 subcluster mycobacteriophages Yes
Hatfull et alHatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) Program; KwaZulu-Natal Research Institute for Tuberculosis and HIV (K-RITH) Mycobacterial Genetics Course; University of California—Los Angeles Research Immersion Laboratory in Virology; Phage Hunters Integrating Research and Education (PHIRE) Program 2013 Genome Announcements Complete genome sequences of 63 mycobacteriophages Yes
Lorenz L, et alLorenz L, Lins B, Barrett J, Montgomery A, Trapani S, Schindler A, Christie GE, Cresawn SG, Temple L 2013 Virology Genomic characterization of six novel Bacillus pumilus bacteriophages Yes
Smith KC et alSmith KC, Castro-Nallar E, Fisher JN, Breakwell DP, Grose JH, Burnett SH. 2013 BMC Genomics Phage cluster relationships identified through single gene analysis No
Pope, WH et alPope WH, Jacobs-Sera D, Best AA, Broussard GW, Connerly PL, Dedrick RM, Kremer TA, Offner S, Ogiefo AH, Pizzorno MC, Rockenbach K, Russell DA, Stowe EL, Stukey J, Thibault SA, Conway JF, Hendrix RW, Hatfull GF. 2013 PLoS One Cluster J mycobacteriophages:intron splicing in capsid and tail genes Yes
Hatfull et alHatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science Program; KwaZulu-Natal Research Institute for Tuberculosis and HIV Mycobacterial Genetics Course Students; Phage Hunters Integrating Research and Education Program 2012 Journal of Virology Complete genome sequences of 138 mycobacteriophages Yes
Jacobs-Sera, D., et alJacobs-Sera D, Marinelli LJ, Bowman C, Broussard GW, Guerrero Bustamante C, Boyle MM, Petrova ZO, Dedrick RM, Pope WH; Science Education Alliance Phage Hunters Advancing Genomics And Evolutionary Science Sea-Phages Program, Modlin RL, Hendrix RW, Hatfull GF. 2012 Virology On the nature of mycobacteriophage diversity and host preference Yes
Mageeney C, et al.Mageeney C, Pope WH, Harrison M, Moran D, Cross T, Jacobs-Sera D, Hendrix RW, Dunbar D, Hatfull GF. 2012 Journal of Virology Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization. Yes
Harrison, Dunbar, Ratmansky, et alHarrison M, Dunbar D, Ratmansky L, Boyd K, Lopatto D 2011 CBE Life Sciences Education Classroom-based science research at the introductory level: changes in career choices and attitude No
Cresawn SG, et al.Cresawn SG, Bogel M, Day N, Jacobs-Sera D, Hendrix RW, Hatfu 2011 BMC Bioinformatics Phamerator: a bioinformatic tool for comparative bacteriophage genomics. No
Pope WH, Ferreira CM, Jacobs-Sera D, et alPope WH, Ferreira CM, Jacobs-Sera D, Benjamin RC, Davis AJ, DeJong RJ, Elgin SC, Guilfoile FR, Forsyth MH, Harris AD, Harvey SE, Hughes LE, Hynes PM, Jackson AS, Jalal MD, MacMurray EA, Manley CM, McDonough MJ, Mosier JL, Osterbann LJ, Rabinowitz HS, Rhyan CN, Russell DA, Saha MS, Shaffer CD, Simon SE, Sims EF, Tovar IG, Weisser EG, Wertz JT, Weston-Hafer KA, Williamson KE, Zhang B, Cresawn SG, Jain P, Piuri M, Jacobs WR Jr, Hendrix RW, Hatfull GF. 2011 PLoS One Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4 Yes
Pope WH et alPope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AA, Ares M Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SC, Engelsen AE, English BE, Erb ML, Estrada C, Filliger LZ, Findley AM, Forbes L, Forsyth MH, Fox TM, Fritz MJ, Garcia R, George ZD, Georges AE, Gissendanner CR, Goff S, Goldstein R, Gordon KC, Green RD, Guerra SL, Guiney-Olsen KR, Guiza BG, Haghighat L, Hagopian GV, Harmon CJ, Harmson JS, Hartzog GA, Harvey SE, He S, He KJ, Healy KE, Higinbotham ER, Hildebrandt EN, Ho JH, Hogan GM, Hohenstein VG, Holz NA, Huang VJ, Hufford EL, Hynes PM, Jackson AS, Jansen EC, Jarvik J, Jasinto PG, Jordan TC, Kasza T, Katelyn MA, Kelsey JS, Kerrigan LA, Khaw D, Kim J, Knutter JZ, Ko CC, Larkin GV, Laroche JR, Latif A, Leuba KD, Leuba SI, Lewis LO, Loesser-Casey KE, Long CA, Lopez AJ, Lowery N, Lu TQ, Mac V, Masters IR, McCloud JJ, McDonough MJ, Medenbach AJ, Menon A, Miller R, Morgan BK, Ng PC, Nguyen E, Nguyen KT, Nguyen ET, Nicholson KM, Parnell LA, Peirce CE, Perz AM, Peterson LJ, Pferdehirt RE, Philip SV, Pogliano K, Pogliano J, Polley T, Puopolo EJ, Rabinowitz HS, Resiss MJ, Rhyan CN, Robinson YM, Rodriguez LL, Rose AC, Rubin JD, Ruby JA, Saha MS, Sandoz JW, Savitskaya J, Schipper DJ, Schnitzler CE, Schott AR, Segal JB, Shaffer CD, Sheldon KE, Shepard EM, Shepardson JW, Shroff MK, Simmons JM, Simms EF, Simpson BM, Sinclair KM, Sjoholm RL, Slette IJ, Spaulding BC, Straub CL, Stukey J, Sughrue T, Tang TY, Tatyana LM, Taylor SB, Taylor BJ, Temple LM, Thompson JV, Tokarz MP, Trapani SE, Troum AP, Tsay J, Tubbs AT, Walton JM, Wang DH, Wang H, Warner JR, Weisser EG, Wendler SC, Weston-Hafer KA, Whelan HM, Williamson KE, Willis AN, Wirtshafter HS, Wong TW, Wu P, Yang Y, Yee BC, Zaidins DA, Zhang B, Zúniga MY, Hendrix RW, Hatfull GF. 2011 PLoSOne Expanding the diversity of mycobacteriophages: Insights into genome architecture and evolution Yes
Hatfull et al.Hatfull GF, Jacobs-Sera D, Lawrence JG, Pope WH, Russell DA, Ko CC, Weber RJ, Patel MC, Germane KL, Edgar RH, Hoyte NN, Bowman CA, Tantoco AT, Paladin EC, Myers MS, Smith AL, Grace MS, Pham TT, O'Brien MB, Vogelsberger AM, Hryckowian AJ, Wynalek JL, Donis-Keller H, Bogel MW, Peebles CL, Cresawn SG, Hendrix RW. 2010 J Mol Biol. Comparative genomic analysis of sixty mycobacteriophage genomes: Genome clustering, gene acquisition and gene size No
Temple L, Cresawn SG, Monroe JD.Temple L, Cresawn SG, Monroe JD. 2010 Biochemistry and Molecular Biology Education Genomics and bioinformatics in undergraduate curricula: Contexts for hybrid laboratory/lecture courses for entering and advanced science students No
Caruso SM1, Sandoz J, Kelsey J.Caruso SM, Sandoz J, Kelsey J. 2009 CBE Life Sciences Education Non-STEM undergraduates become enthusiastic phage-hunters No
Sampson T et alTimothy Sampson, Gregory W Broussard, Laura J Marinelli, Deborah Jacobs-Sera, Mondira Ray, Ching-Chung Ko, Daniel Russell, Roger W Hendrix, Graham F Hatfull 2009 Microbiology (Reading, England) Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements. No
Morris P et alPeter Morris, Laura J Marinelli, Deborah Jacobs-Sera, Roger W Hendrix, Graham F Hatfull 2008 Journal of bacteriology Genomic characterization of mycobacteriophage Giles: evidence for phage acquisition of host DNA by illegitimate recombination. No
Pham TT et alThuy T Pham, Deborah Jacobs-Sera, Marisa L Pedulla, Roger W Hendrix, Graham F Hatfull 2007 Microbiology (Reading, England) Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible site-specific integration vectors for mycobacteria. No
Hanauer DI, et al.Hanauer DI, Jacobs-Sera D, Pedulla ML, Cresawn SG, Hendrix RW, Hatfull GF. 2006 Science Inquiry learning. Teaching scientific inquiry. No
Hatfull GF et alGraham F Hatfull, Marisa L Pedulla, Deborah Jacobs-Sera, Pauline M Cichon, Amy Foley, Michael E Ford, Rebecca M Gonda, Jennifer M Houtz, Andrew J Hryckowian, Vanessa A Kelchner, Swathi Namburi, Kostandin V Pajcini, Mark G Popovich, Donald T Schleicher, Brian Z Simanek, Alexis L Smith, Gina M Zdanowicz, Vanaja Kumar, Craig L Peebles, William R Jacobs, Jeffrey G Lawrence, Roger W Hendrix 2006 PLoS genetics Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform. No
Pedulla ML et alMarisa L Pedulla, Michael E Ford, Jennifer M Houtz, Tharun Karthikeyan, Curtis Wadsworth, John A Lewis, Debbie Jacobs-Sera, Jacob Falbo, Joseph Gross, Nicholas R Pannunzio, William Brucker, Vanaja Kumar, Jayasankar Kandasamy, Lauren Keenan, Svetsoslav Bardarov, Jordan Kriakov, Jeffrey G Lawrence, William R Jacobs, Roger W Hendrix, Graham F Hatfull 2003 Cell Origins of highly mosaic mycobacteriophage genomes. No
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