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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

SEA-PHAGES Publications

Below is a list of publications that are based on data generated by participants in the SEA-PHAGES program and are authored by SEA-PHAGES students or faculty.

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Undergrad Authors

Fast, KM et alFast KM, Forrest BE, Granec GR, Larrimore JD, Morse AE, Ryan ED, Schellhammer PK, Keener TW, Sandel MW. 2019 Microbiology Resource Announcements Complete Genome Sequences of Mycobacteriophages Candle, Schatzie, Sumter, and Waleliano 6
Hughes LE et al.Hughes LE, Shaffer CD, Ware VC, Aguayo I, Aziz RM, Bhuiyan S, Bindert IS, Calovich-Benne CK, Chapman J, Donegan-Quick R, Farooq A, Garcia C, Graham LH, Green BY, Kenna MA, Kneeream ER, Laing CE, Mageeney CM, Meridew SN, Mikolon AR, Morgan RE, Nayek S, Olugbade ID, Pike KC, Schlegel LE, Shishido TC, Suresh T, Suri N, Weston Hafer K, Garlena RA, Russell DA, Cresawn SG, Pope WH, Jacobs-Sera D, Hatfull GF 2018 Genome Announcements Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species. No
Fast KM et alFast KM, Keener TW, Castleberry S, Jones KD , Larrimore JD, Long CA, Newburn JT, Pritchett NC, Schellhammer PK, Sandel MW. 2018 Genome Announcements Complete Genome Sequences of Mycobacteriophages Kwksand96 and Cane17 Yes
Fast KM et alFast KM, Keener T, Ali R, Butcher BM, Millwood JD, Odom T, Schellhammer PK, Ufomadu E, Sandel MW 2018 Genome Announcements Genome Sequence of a Newly Isolated F2 Subcluster Mycobacteriophage from the Black Belt Geological Region of Western Alabama Yes
Lee, Puglisi, et alMartin Lee, Kayla M. Puglisi, UMBC STEM-BUILD Cohort 1, Ivan Erill, Steven M. Caruso 2018 Genome Announcements Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages Yes
Christopher James Pattona, Hari Kotturia Christopher James Pattona, Hari Kotturia 2018 Genome Announcements Genomic Sequence of Mycobacteriophage OKCentral2016 Yes
Doyle et al.Doyle EL, Fillman CL, Reyna NS, Tobiason DM, Westholm DE, Askins JL, Backus BP, Baker AC, Ballard HS, Bisesi PJ, Bond L, Byrnes D, Carlstedt H, Dodson KS, Fallert MJ, Foster KJ, Games DN, Grams TR, Guild NA, Hurd A, Iwata N, Kepler CR, Krenzke LR, Luekens K, Lewis J, McEntee C, McGee JC, Nalley N3, Plymale RC, Prochaska J, Rogers RG, Schipper JB, Snyder K, Uhrich K, Vermillion CD, Vickers SK, Wenta MD, Yates TZ, Young CF, Stoner TH, Pope WH, Jacobs-Sera D, Garlena RA, Russell DA, Cresawn SG, Hatfull GF. 2018 Genome Announcements Genome Sequences of Four Cluster P Mycobacteriophages 33
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2016 UMBC Phage Hunters 2018 Genome Announcements Complete Genome Sequence of Streptomyces Bacteriophage Abt2graduatex2 Yes
Chung HM et alChung HM, D'Elia T, Ross JF, Alvarado SM, Brantley MC, Bricker LP, Butler CR, Crist C, Dane JM, Farran BW, Hobbs S, Lapak M, Lovell C, Ludergnani N, McMullen A, Mirza SA, Thrift N, Vaughan DP, Worley G, Ejikemeuwa A, Zaw M, Albritton CF, Bertrand SC, Chaudhry SS, Cheema VA, Do C, Do ML, Duong HM, El-Desoky DH, Green KM, Lee RN, Thornton LA, Vu JM, Zahra MN, Cresawn SG, Stoner TH, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF 2017 Genome Announcements Complete Genome Sequences of Mycobacteriophages Clautastrophe, Kingsolomon, Krypton555, and Nicholas 1
Adair et al.Adair TL, Stowe E, Pizzorno MC, Krukonis G, Harrison M; Baylor University SEA-PHAGES; Bucknell University SEA-PHAGES; Cabrini University SEA-PHAGES, Cresawn SG, Garlena RA, Russell DA, Pope WH, Jacobs-Sera D, Hatfull GF. 2017 Genome Announcements Genome Sequences of Three Cluster AU Arthrobacter Phages, Caterpillar, Nightmare, and Teacup Yes
Herren et al.Herren CD, Peister A, Breton TS, Hill MS, Anderson MS, Chang AW, Klein SB, Thornton MM, Vars SJ, Wagner KE, Wiebe PL, Williams TG, Yanez CP, Ackles JM, Artis D, Brazier RJ, Bryant RJ, Callwood KO, Carter IH, DeBose CL, Edwards CD, Ezemba IC, Joaquin RR, Meghoo-Peddie ZM, Meghoo-Peddie ZG, Moore RW, Smith CE, Turner AJ, Vorters RL, Wider JJ, Krout LL, Comis MS, Davick MJ, Michaud EE, Shevenell BE, Stanley SE, Frank CI, Montgomery JR, Blumer LS, Doty JA, Smith-Caldas M, Pope WH, Cresawn SG, Russell DA, Garlena RA, Jacobs-Sera D, Hatfull GF. 2017 Genome Announcements Genome Sequences of Four Subcluster L2 Mycobacterium Phages, Finemlucis, Miley16, Wilder, and Zakai No
Bonilla et al.Bonilla, J. A., Isern, S., Findley, A. M., Klyczek, K. K., Michael, S. F., Saha, M. S., Buchser, W.J., Forsyth, M. H., Paudel, S., Gissendanner, C. R., Wiedemeier, A. M. D., Alonzo, F. L., University of Wisconsin-River Falls, SEA-PHAGES, Florida Gulf Coast University, SEA-PHAGES, University of Louisiana-Monroe, SEA-PHAGES, College of William and Mary SEA-PHAGES, Garlena, R. A., Russell, D. A., Pope, W. H., Cresawn, S. G., Jacobs-Sera, D., Hatfull, G. F. 2017 Genome Announcements Genome Sequences of 19 Rhodococcus erythropolis Cluster CA Phages Yes
Anders et al.Anders KR, Barekzi N, Best AA, Frederick GD, Mavrodi DV, Vazquez E; SEA-PHAGES, Amoh NYA, Baliraine FN, Buchser WJ, Cast TP, Chamberlain CE, Chung HM, D'Angelo WA, Farris CT, Fernandez-Martinez M, Fischman HD, Forsyth MH, Fortier AG, Gallo KF, Held GJ, Lomas MA, Maldonado-Vazquez NY, Moonsammy CH, Namboote P, Paudel S, Polley SM, Reyes GM, Rubin MR, Saha MS, Stukey J, Tobias TD, Garlena RA, Stoner TH, Cresawn SG, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF. 2017 Genome Announcements Genome Sequences of Mycobacteriophages Amgine, Amohnition, Bella96, Cain, DarthP, Hammy, Krueger, LastHope, Peanam, PhelpsODU, Phrank, SirPhilip, Slimphazie, and Unicorn Yes
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2016 UMBC Phage Hunters 2017 Genome Announcements Complete Genome Sequences of Three phi29-Like Bacillus cereus Group Podoviridae Yes
Donegan-Quick et alRichard Donegan-Quick, Zane A. Gibbs, Patricia O. Amaku, Joshua T. Bernal, Dana A. M. Boyd, Angela R. Burr, Rainna E. Coelho, Akpedje S. Dossou, Ryan M. Henry, Mai Huynh, Thalia A. Kanani-Hendijani, Guillermina Martinez, Tianeaka O. McClendon-Moss, Sergio Orozco, Johnny M. San Martin, Kaitlyn E. Stoddart, Madison M. Stringer, Rachel L. Villegas, Subhayu Nayek, Nikita Suri, Rebecca A. Garlena, Daniel A. Russell, Lee E. Hughes 2017 Genome Announcements Genome Sequences of Five Streptomyces Bacteriophages Forming Cluster BG Yes
Kirk Anders, Marianne K. PoxlietnerKirk R. Anders, Alex M. Murphy*, William F. Ettinger, Douglas Kempthorne, Charles Kittridge, Alex Kures, Sarah Lundgren, Jacob Masters, Rachel Noyes, Christina Winters, Perry Yazzolino, Kasandra Ziebert, Joseph Haydock, Stephen Hayes, Rebecca A. Garlena, Daniel A. Russell, Marianne K. Poxleitner, Ann-Scott H. Ettinger 2017 Genome Announcements Genome Sequences of Cluster K Mycobacteriophages DrHayes, Urkel, and SamuelLPlaqson Yes
Layton et alLayton SR, Hemenway RM, Munyoki CM, Barnes EB, Barnett SE, Bond AM, Narvaez JM, Sirisakd CD, Smith BR, Swain J, Syed O, Bowman CA, Russell DA, Bhuiyan S, Donegan-Quick R, Benjamin RC, Hughes LE. 2016 Genome Announcements Genome Sequences of Streptomyces Phages Amela and Verse Yes
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2015 UMBC Phage Hunters 2016 Genome Announcements Genome Sequence of Bacillus cereus Group Phage SalinJah Yes
Abraham, Bousquet, Bruff, et alJ. Abraham, A.-C. Bousquet, E. Bruff, N. Carson, A. Clark, A. Connell, Z. Davis, J. Dums, C. Everington, A. Groth, N. Hawes, N. McArthur, C. McKenney, A. Oufkir, B. Pearce, S. Rampal, H. Rozier, J. Schaff, T. Slehria, S. Carson, E. S. Miller 2016 Genome Announcements Paenibacillus larvae Phage Tripp Genome Has 378-Base-Pair Terminal Repeats Yes
Carson et alCarson S, Bruff E, DeFoor W, Dums J, Groth A, Hatfield T, Iyer A, Joshi K, McAdams S, Miles D, Miller D, Oufkir A, Raynor B, Riley S, Roland S, Rozier H, Talley S, Miller ES. 2015 Genome Announcements Genome Sequences of Six Paenibacillus larvae Siphoviridae Phages 16
Pope WH et alPope WH, Carbonara ME, Cioffi HM, Cruz T, Dang BQ, Doyle AN, Fan OH, Gallagher M, Gentile GM, German BA, Farrell ME, Gerwig M, Hunter KL, Lefever VE, Marfisi NA, McDonnell JE, Monga JK, Quiroz KG, Pong AC, Rimple PA, Situ M, Sohnen PC, Stockinger AN, Thompson PK, Torchio NM, Toner CL, Ulbrich MC, Vohra NI, Zakir A, Adkins NL, Brown BR, Churilla BM, Kramer ZJ, Lapin JS, Montgomery MT, Prout AK, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome Sequences of Mycobacteriophages AlanGrant, Baee, Corofin, OrangeOswald, and Vincenzo, New Members of Cluster B. 35
Pope WH et alPope WH, Augustine DA, Carroll DC, Duncan JC, Harwi KM, Howry R, Jagessar B, Lum BA, Meinert JW, Migliozzi JS, Milliken KA, Mitchell CJ, Nalatwad AS, Orlandini KC, Rhein MJ, Saravanan V, Seese BA, Schiebel JG, Thomas KB, Adkins NL, Cohen KL, Iyengar VB, Kim H, Kramer ZJ, Montgomery MT, Schafer CE, Wilkes KE, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF 2015 Genome Announcements Genome Sequences of Cluster G Mycobacteriophages Cambiare, FlagStaff, and MOOREtheMARYer. 26
Pope WH et alPope WH, Bernstein NI, Fasolas CS, Mezghani N, Pressimone CA, Selvakumar P, Stanton AC, Lapin JS, Prout AK, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of Mycobacteriophage Mindy 8
Pope WH et alPope WH, Carter JT, Dasher KL, Haynberg MC, Reddi A, Shedlock KA, Lapin JS, Prout AK, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of a newly isolated mycobacteriophage, ShedlockHolmes 7
Pope WH et alPope WH, Jacobetz E, Johnson CA, Kihle BL, Sobeski MA, Werner MB, Adkins NL, Kramer ZJ, Montgomery MT, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of Mycobacteriophage Phayonce 8
Pope WH et alPope WH, Ahmed T, Drobitch MK, Early DR, Eljamri S, Kasturiarachi NS, Klonicki EF, Manjooran DT, Ní Chochlain AN, Puglionesi AO, Rajakumar V, Shindle KA, Tran MT, Brown BR, Churilla BM, Cohen KL, Wilkes KE, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF 2015 Genome Announcements Genome sequences of Mycobacteriophages Luchador and Nerujay 16
Pope WH et alPope WH, Bina EA, Brahme IS, Hill AB, Himmelstein PH, Hunsicker SM, Ish AR, Le TS, Martin MM, Moscinski CN, Shetty SA, Swierzewski T, Iyengar VB, Kim H, Schafer CE, Grubb SR, Warner MH, Bowman CA, Russell DA, Hatfull GF. 2015 Genome Announcements Genome sequence of Mycobacteriophage Momo 14
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2013 UMBC Phage Hunters 2015 Genome Announcements Genome Sequences of Two Bacillus cereus Group Bacteriophages, Eyuki and AvesoBmore No
Erill, Caruso, et alIvan Erill, Steven M. Caruso, on behalf of the 2014 UMBC Phage Hunters 2015 Genome Announcements Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba No
Breakwell, Barrus, Benedict, et alBreakwell DP1, Barrus EZ, Benedict AB, Brighton AK, Fisher JN, Gardner AV, Kartchner BJ, Ladle KC, Lunt BL, Merrill BD, Morrell JD, Burnett SH, Grose JH. 2013 Genome Announcements Genome sequences of five b1 subcluster mycobacteriophages Yes
Hatfull et alHatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) Program; KwaZulu-Natal Research Institute for Tuberculosis and HIV (K-RITH) Mycobacterial Genetics Course; University of California—Los Angeles Research Immersion Laboratory in Virology; Phage Hunters Integrating Research and Education (PHIRE) Program 2013 Genome Announcements Complete genome sequences of 63 mycobacteriophages Yes
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